computeES.lists copy: compute.Stats

In galder-max/GSEAlite: GSEA lite performs simple GSEA analysis with few useful functions

Description

computes statistics from a vector of null distribution values (expected) and a vector of observed values

Usage

compute.Stats<-function(null.distrib,final.scores, nb.genes, nperms)

Arguments

null.distrib	null distribution = expected vector of values
final.scores	scores = observed vector of values
nb.genes	number of observed values = length(final.scores)
nperms	number of nperms = length(null.distrib)/nb.genes

Value

returns a dataframe with 7 columns : 1. the gene's row 2. observed score 3. rank of the observed score 4. pval.up 5. qval.up 6. pval.do 7. qval.do

Author(s)

[e-mail]

See Also

GSEA.plot

Examples

##used internally

galder-max/GSEAlite documentation built on Jan. 30, 2021, 10:50 p.m.